Here you can find a little of the software that I have been involved in
during study or work.
All the software listed here is open source (either (L)GPL or BSD).
Web
Linux
-
Completion deadlines - Upper bound on worst-case latency
induced by Native Command Queuing. (My Master's thesis)
Bioinformatics
The following algorithms are project work for two bioinformatics
courses I attended at the university. They are all implemented in
the C programming language.
-
HPFold -
Ant Colony Optimisation (ACO) algorithm for the 2D hydrophobic
polar protein folding problem
-
SEQAlign -
Global alignment of two sequences
(Needleman-Wunsch, Hirschberg and Gotoh's affine gap penalty)
-
Editdist -
Edit distance between two sequences (Four-Russians speedup)
-
RFDist -
Robinson-Foulds distance between evolutionary trees
Miscellaneous
-
JavaFAM -
a simple JNI wrapper for FAM
(File Alteration Monitor)
$Date: 2009-05-23 12:12:48 +0200 (Sat, 23 May 2009) $ - lp@core.dk